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… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … 5, 16, and 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, and … eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed …

The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in … and multidisciplinary nature of DOE mission science projects, this initiative aims to encourage innovative …

… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic … (LANL), and DE-AC05-76RL01830 (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project …

With a background in experimental and computational surface physics, Dr. Goodstein held positions at … in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic … of interest and gene copy number variation across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant …

In honor of the JGI's 25th anniversary in 2022, we have … source of both protein and oil was also the largest plant project completed by the JGI. It has since been cited more … Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are available on MycoCosm …

Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science … (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …

… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups …

Uncovering associations between plant roots and fungi that can help or harm … plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …

Congratulations to Jane Grimwood, who has been appointed the … after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human … she has continued to contribute across JGI plant genomes. She has appeared on the annual Highly Cited …

Database provides details on river microbes in 90% of US continental watersheds. The … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … anything. The collaborative consortium behind the GROWdb project demonstrates not only how researchers can …

To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone Health) and Leslie Mitchell (Neochromosome) have worked … yeast’s native chromosomes with synthetic versions. This project has turned out to be an international collaboration, …

The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, …