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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a … science and collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    … relevant organisms. We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural products and the science and … In a really more general population that isn’t selected for interesting chemistry, you’re going to find … Episode Transcript …
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics … that utilizes internal analytical standards to accurately measure environmental microbiome activity levels.This …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , … of 21 fields appear on the 2019 list. Congratulations to: Project Manager Kerrie Barry, Cross-Field Category Fungal …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the … Institute and the collaborative projects funded through the CSP program. In addition to continuing to develop strategies … Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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A Genome-Wide Scan for Evidence of Selection in a Maize Population Under Long-Term Artificial Selection for Ear Number
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not … are symbionts, rather than free-living organisms as had been originally thought. The Impact The Antarctic … to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, …
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JGI announces 2025 Functional Genomics awardees
… [ Pictured from left: [Above] Hao Chen, Matthew Cope-Arguello, Theophilus Olufemi … genomic information into biological function. Through our  CSP Functional Genomics call , we look for projects that will leverage the JGI's DNA synthesis and …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, … enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward … supported under Contract No. DE-AC02-05CH11231. The work was also supported by the NSF grants  DEB-1354625 and  …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Selection to sequence: opportunities in fungal genomics
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