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JGIota: Looking Back at Sequencing for Soybeans
… crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence … have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear … Missouri), Peter van Esse (The Sainsbury Laboratory) and Sebastien Duplessis (INRAE). …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Yeast strains engineered for the … for maintenance to keep processes running smoothly. As  reported August 26, 2021, in  Nature Communications , … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was preceded by short final presentations attended by more than 75 JGI …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral alignment, molecular … Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical Engineering …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
… Gary Trubl, a virologist at Lawrence Livermore National Laboratory, wants to understand how viruses impact the release of greenhouse gases from Arctic permafrost. But to see …
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JGI announces 2025 Functional Genomics awardees
… Olufemi Isimikalu, Todd H. Oakley, BJ Philmus and Aaron M. Roshotte; [Below] Paul Scesa, Kathleen Scott, Tiffany … genomic information into biological function. Through our  CSP Functional Genomics call , we look for projects that … processes for next-generation materials production. Enabled by the JGI, which is supported by the Department of Energy's …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British … and Uwe Ohler at   Humboldt Universität zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral … team at the Supercomputing conference, SC’18, led by researchers at Oak Ridge National Laboratory. Dr. Fagnan … Informatics Officer provides advice and strategic direction for the overall design and implementation of …
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A User-Centered Approach to Accessing JGI Data
… the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … with completed projects that are eligible for public release, have completed their embargos, and numerous other … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers … and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. There is … well as staff at the other participating facilities, who consider technical feasibility and readiness to begin work.  …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The … Through advances in sequencing technologies and computational approaches, more and more virus sequences are being … to over 2.4 million viral genomes available in the latest release of IMG/VR . CheckV is freely available for download …
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