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2025 NeLLi Symposium
… Registration fees: Regular attendees  (LBNL and external): $400  Industry: $450  Students and postdocs (including LBNL … complexity, the tree of life, cultivation of new lineages and the function of candidate lineages in … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited … following the discovery of bacteria 5,000 times the average size. Woyke’s  Single Cells Group helped … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse …
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2024 Progress Report
… our service to the community through responsibly managing our people and resources.     Director's Perspective … in our new Strategic Plan , which was released in April 2024 — through serving an increased number of users with a … 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Internship Program, first sampled the area in summer 2016.  She described the microbial diversity patterns of … advanced in my understandings than I would be at this stage without the internship and mentorship that followed. I … defends her dissertation in May. Since its inception in 2014, more than 20 UC Merced students have contributed to the …
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Making a Lichen Together
… nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s genomes and compared them to close relatives who don’t engage in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and colleagues worked with Igor Grigoriev, the Fungal & Algal Program …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… For the last 15 years, Ray Turner has been one constant for the Joint … retired Naval Commander retires from Berkeley Lab. On June 24, in what was billed as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – according to plan but …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, … Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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Methane Makers in Yosemite’s Lakes
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… high school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute … system, reached  Emiley Eloe-Fadrosh , who heads the  Metagenome Program . “After discussing the project with him, I …
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Cataloging the Microbes that Manage the Health of River Systems
… environmental and human health, energy production and agriculture. Understanding the compositions of river … the microbiology of watershed systems, they utilized over 160 river water samples collected through WHONDRS, a … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information … of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics Officer. JGI’s Portals, … needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. …
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