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A One-Stop Shop for Analyzing Algal Genomes
… algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal … inquiry: it shows a full phylogenetic tree of more than 100 sequenced algal genomes — many sequenced by the JGI — so researchers can easily explore the …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… composition and functional potential varied across tree species and sites, reflecting ecological patterns shaped by … composition varied across both sites and host tree species, with geographic site exerting the stronger … by the National Science Foundation (NSF) under grant DEB-1442348. The work (proposal:  …
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Refining the Process of Identifying Algae Biotechnology Candidates
… Researchers collaborating across multiple institutions have sequenced and analyzed the genome of an alga that thrives in … expertise at the National Labs to screen, characterize, sequence and then analyze the genomes and multi-omics … that simulated summer in Arizona. Scenedesmus  sp. NREL 46B-D3, which thrives both in saltwater and wastewater, was …
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Matt Blow
… Bowers et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer Species during Free-Living Growth and during Nitrogen-Fixing …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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User Executive Committee Charter
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An Addiction Crucial to a Fungus’ Reproduction
… Burkholderia , is recognized as a mutualist, where both species of organism benefit from association, but was … with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as …
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Leo Baumgart
… plant gene regulation." Nature Plants 11, no. 8 (2025): 1514-1527. Lax, Carlos, Stephen J. Mondo, José F. Martínez, … microsporus." Nature Communications 16, no. 1 (2025): 3843. McCahill, Ian W., Logayn T. Abushal, Bahman Khahani, … and Viola Willemsen. "Two deeply conserved non-coding sequences control PLETHORA1/2 expression and coordinate …
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Pinning Down a Piece of Photosynthesis
… of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of … a similar region —  a domain of unknown function, DUF2470. In the world of proteins, a domain of unknown function … the cell, Grosjean used the JGI-developed  guideRNA and Sequence Extraction Tool (gRNA-SeqRET) to produce knock-out …
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Charting Progress toward Professional Goals
… people in my group and my mentor looked over and was like, “why are you explaining phylogeny to people who have been …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… in their proposal as long as they’re staying under the sequence cap? A(nswer): Proposals that are looking at …
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JGI@25: From Life at the Extremes to Editing Genomes
… CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her … down my spine; if CRISPR was present in so many different species, there was a good chance that nature was using it to … Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV et …
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