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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible … and NMDC? A: We have reached out to KBase regarding use of our search API. They have expressed an interest in using … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Synthetic Biology Lab
… applications group. The DNA synthesis and assembly group: Our production group operates as user facility that aims to … the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the … including PacBio and Illumina.  The synthetic biology user science group: The applications group is focus on developing …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is also a co-PI for the National Microbiome Data Collaborative where she leads infrastructure …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Natural Prodcast Episode 21: Elizabeth Parkinson
… you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy today to be handing over our interview with Dr Elizabeth (or Betsy) Parkinson from … transcripts, and show notes with links to papers around the science we talked about, at natural prodcast dot com. So, …
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An Integrated Dataset to Understand Ecosystem Interaction
… between poplar trees and their microbial partners. The Science To help better understand how ecosystems work and … through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of microbes living … trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization …
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A Social Science Experience
… 2017 Summer Interns Share Highlights of their time at the JGI …
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Fungal & Algal Program
… solutions, fostering a bioeconomy powered by nature’s resources. … produce valuable metabolites. The program seeks to expand our understanding of algal biology using genomics and … genomes to support both basic research and applied science. By advancing fungal and algal genomics, the program …
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CSP Large Scale Call
… The Community Science Program Large Scale call is focused on genomic … that are listed in the call and leverage the diversity of JGI technical and analytical capabilities. All proposals … for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of …
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Natural Prodcast Episode 19: Bill Fenical
… years. And I really want to make sure that we talk about your place in the field, because you’ve been at this for a … ask things all day. ALISON TAKEMURA: I wanted to ask, did scientists at that time just think that the ocean was kind … to then switch from financial support from the National Science Foundation to financial support from the National …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… Register here Book your stay at the conference venue This inaugural event will … and applying laboratory ecosystems to help transition microbiome science from largely observational to reproducible …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… roles in plant health and environmental processes. The Science In a recent Microbiome paper , scientists focused on the conifer needle microbiome. The … of plants and influence nutrient turnover over the course of a leaf’s life. Additionally, the phyllosphere …
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