Search

… more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required … the bioinformatic challenges associated with the corresponding data analysis. …

… Implementation Lead, he directs a multidisciplinary team responsible for piloting and operationalizing new genomic … been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also … and Viola Willemsen. "Two deeply conserved non-coding sequences control PLETHORA1/2 expression and coordinate …

… fuels for cars and jets. By studying a close relative model species like P. hallii , researchers can develop crop … Through the JGI’s Community Science Program , JGI sequenced and assembled near-complete genomes of P. hallii … complete) and P. hallii var. filipes (94.8% complete) and resequenced a host of natural collections from across the …

… approved through the annual Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint Genome … within the eucalypts, a group of fast-growing tree species that are widely grown as feedstocks for … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned …

… of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the … of the bean. Though the JGI no longer works on food crops specifically, “[At the JGI] we do use Phaseolus as a test …

… Plant Cell. Auxenochlorella is an allodiploid hybrid of two species, similar to a mule, but that is still able to … This discovery creates a powerful platform for producing specialty oils, chemical feedstocks and industrial … genome assembly, researchers offer a gapless end-to-end sequence of complete chromosomes. Auxenochlorella solves a …

… genomics.  Nature Microbio 2:17087. Mondo et al (2017)  Widespread adenine N6-methylation of active genes in fungi.  … Science, 2011; 332: 960-963. Colbourne JK et al. The ecoresponsive genome of  Daphnia pulex .  Science. 2011; 331: … and lignocellulose degradation encoded in the genome sequence of  Schizophyllum commune . Nat Biotech.  2010; 28: …

… Sequence-based studies — from metagenomics to single-cell … France, leverage their experience to provide a perspective on giant virus diversity, and how sequencing and … of these approaches. One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference …

… are engineering next-generation feedstocks through CRISPR-edited poplars with optimized lignin, engineering … the research consortium aims to generate over a terabase of sequence. “We are thrilled to support this year’s CSP awardees as they embark on ambitious projects that span …