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MGM Workshop at Fisabio Summer School
… Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and … research results in genomics, metagenomics and the human microbiome. The workshop will train participants in …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the bioenergy and biotechnology potential of algae, and sampling of the length and breadth of algal … sequence information to BER funded activities of plant systems. We will describe how to apply for a project with …
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Steven Wilson
… Since 2018, Mr. Wilson has served as the Systems Engineering Group lead.   The group is responsible … and supporting applications that span the lifecycle of activities at JGI - proposal submission and review, … automated sequence quality control and automation of microbial/metagenomic assemblies, portals that make data …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria … for infectious disease. Streptomycetes are also abundant in soil and can be used as biocontrol agents and to promote … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since …
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Axel Visel
… Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … novel tools for large-scale in situ gene expression analysis in multicellular organisms. During his postdoctoral … methods for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those virus-host interactions? Do generalist viruses run rampant, capable of infecting different host species? Or, do they tend to …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … access ecological data to better understand how U.S. ecosystems are changing.  Through the  “Facilities Integrating … Q:  Does NEON have or plan on collecting RNA samples from soil or surfaces for microbe-focused collections? A: Not at …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … Joint Genome Institute after serving as the Chief Operating Officer of the DOE Joint Bioenergy Institute and the Operations Deputy for LBNL’s Biological Systems & Engineering Division. Prior to his tenure with …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… it possible for researchers to get a close look at more ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … also collaborated to advance computing infrastructure and analysis. This way, JGI users — both primary, …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large … de novo plant assembly and the post-genome computational analysis at HudsonAlpha. …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS … support, how much help can users expect for data analysis of the different omics analysis? Are users expected to be trained to handle the … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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