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… beyond what each of these facilities could generate by itself.   Accepted projects must address or be otherwise … synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is … or outside the scope of the call.  Letters are reviewed by scientific staff of the participating User Facilities, as …

… plant fibers. But are they both actually doing the job? By analyzing the enzymes present in the complex organic … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from their soil samples. This …

… increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic … they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  …

… in the Mangroves The bacterium itself was discovered by Olivier Gros, a marine biology professor at the … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …

Registration and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the University of Nevada, … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the … Dartmouth University … Metagenomic and single-cell sequence data have provided a means to access novel …

A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome sequences and annotations are available on JGI’s fungal …

… of products, making data easier to access and use, and by investing in the latest advanced genomic capabilities to … 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed … culminated in a reference for the complex  sugarcane genome sequence. The JGI  partnered  with synchrotron user …

… plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … …

A group led by JGI scientists have made strides in improving and … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, “Once … often fail to express their BGC molecules in the lab. By engineering domesticated close relatives with the BGCs, …

… the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, … and Simon Roux. Kyrpides is part of another project led by Owen White at the University of Maryland, Baltimore. Both … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse …

… are able to partner to form lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could … Summary To shed light on lichen, an international team led by Daniele Armaleo, a biologist at Duke University, … nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s genomes and compared …

Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s … assembly. So while researchers are confident all the DNA sequences came from one cell, including components like … a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy …