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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … viruses are likely to infect, and (iii) identifying the genetic traits of the viruses to better understand their …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … And that led me to get even more interested in how general environmental stressors, um, alter microbial biomass … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … and analysis. This way, JGI users — both primary, data-generating users, as well as secondary, data-downloading …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the Institut … decomposition by the black morel, as well as the gene-expression programs encoding the biochemical processes … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI …
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Toward More Efficient Artificial Photosynthesis
… Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts are … (MPI) for Terrestrial Microbiology and the University of Bordeaux have developed a platform that mimics … carbon captured from the atmosphere in a process that generates energy. The MPI team ultimately aims to develop an …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… Ancient  Chloroflexota s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have … loss of cell walls and a complex pattern of evolution for genes related to eating plant compounds in both the oceanic … ) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The … Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … and evolutionary genomics .” Understanding the nature and genetic basis of functional traits in sphagnum growth and …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and … , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The United States Department of Energy …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université … and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem. Microbiome 11, …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … to learn more about the program's areas of focus, major initiatives and more.  …
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