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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical … high-performance computing resources, an upcoming hackathon led by the Oak Ridge Leadership Computing Facility … applications instead of on simulation codes. “JGI is one of the largest producers of environmental genomics data …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … of using phages to engineer microbial communities. One day, these phages could boost plant-microbe … the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231 (SR, APC, SN).  …
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JGI announces second round of 2023 New Investigator awardees
… From left to right: [above] Emma Bell, Mallory Choudoir, Sneha Couvillion, Tobin … Peterson, Dacheng Ren, Allison Rober, Neal Scott, Chikae Tatsumi, Vojtech Tlaskal, Fernando Torralbo, Luis Felipe … share our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into … than 5% of land on Earth, peatlands store approximately one-third of the world’s soil carbon. The process to harvest … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of Energy (DOE) Joint …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental … team has since identified  Dehalogenimonas etheniformans as one of the strains involved in breaking down PCE at the NRAP … the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH1123. Partial support …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson … list of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited … Highly Cited science and social science researchers in one or more of 21 fields appear on the 2019 list. …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… [Pictured from left to right are: [Above] Sara Branco, Asdrubal Burgos, Posy Busby, Hao … Science Program Large Scale call. This portfolio accelerates bioenergy innovation through genomic discovery across diverse organisms and …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research Division. As a … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s … developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, … Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical Engineering Post-doctoral …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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