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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  … The codebase for Phytozome v12 was first deployed (as the foundation for Phytozome v10) back in 2014.  Several … all versions of Phytozome), can always be access in one of two ways: From the BioMart Genome Archive data warehouse.  …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA … US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: the 50th celebration of … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Access to Rock Star Scientists
… Cole, Mo Kaze, Akshay Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The … JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has further …     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and …
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Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert
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Ray Turner Completes Last Tour of Lab Duty at JGI
… For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation and environmental …
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Ian Blaby
… Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory where he focused on functional genomics of …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or … (secondary metabolomics), how can we map it into these networks? A: We use networks based on the fragmentation …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the … the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes worked with mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science … the data and compute platforms and bioinformatics annotation pipelines that support JGI’s portals, tools, and the … emerging AI-enabled capabilities for science.  Dr. Sneddon is an accomplished leader in data, software, compute, and …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Charting Progress toward Professional Goals
… Select interns look back on meaningful lessons from their summer experiences at the … insights they gained from their mentors, and apply their newfound knowledge to future career paths.  To learn more about … like building my code base, running jobs that take like two days to, like, go through working with data sets that …
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Matt Blow
… these teams provide analysis support and R&D for production and user science. He received his Ph.D. from the Wellcome … Blow carried out postdoctoral work at LBNL, where he worked on computational and experimental approaches to study genome regulation … Trust Sanger Institute, UK and Lawrence Berkeley National Lab …
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