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Graduate Students Get Thesis Research Opportunity at the JGI
… (SCGSR) program awards graduate students the opportunity to pursue part of their thesis research at one of the DOE … result of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of … also serve as a mentor for another SCGSR awardee, Ian Rambo from Brett Baker’s lab at the University of Texas-Austin. …
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Nandita Nath
Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without amplification. …
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Fungus Fuels Tree Growth
… symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata … of Florida collected forest samples of poplar and soil from Washington and Oregon. The cuttings included genotypes from the DOE BioEnergy Science Center (BESC), predecessor …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
Researchers looked across many organisms to see that aminotransferase enzymes have evolved … found that these enzymes have evolved distinctly from both core and specialized enzymes. Even during … across 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, archaea, protist, …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to … it is the largest repository of BGC sequence data from over 1.3 million publicly available bacterial and … gene clusters and secondary metabolites information from isolate and metagenome data.   The SMC ( …
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Computationally Classifying Fungal Lifestyles
… learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … predicting plant pathogens (blue) vs saprobes (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using …
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Massie S. Ballon
… the Communications and Outreach Manager at the JGI. Prior to this role, she served as the primary storyteller and … Ms. Ballon has a degree in molecular biology & biochemistry from Wesleyan University, and a graduate certificate in science communication from UC Santa Cruz. She is one of the Biosciences Area …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … genomic information using minute quantities of DNA derived from individual environmental cells. The proof of principle … team reported the first closed and finished genome derived from an uncultured bacterial single cell – a symbiont of the …
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“A STEM career is in reach and accessible”
Notes from the Summer 2018 Biotech Partners Interns from Antioch High School. Though a partnership with Biotech … that increase participation in higher education and access to fulfilling science careers, JGI hosted five students from …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October … zero waste effort at the IGB. “Sustainable Berkeley Lab is really gearing towards getting us to zero waste …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The … and what they do. Summary The name PhycoCosm stems from the Greek phykos, meaning seaweed. Seaweeds are algae, … data are available, a user can also analyze gene expression from published experiments; study DNA methylation, which …
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