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… and we talk about an ongoing project I’ve been working with him on as an exploration into the secondary metabolism … in the process. We now have cell pellets. And we’re pulling genomic DNA out of those cell pellets. So, we’re about ready … this project too. I’m really looking forward to seeing the data when it finally gets off the sequencers. The pandemic …

… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … Users were previously limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …

… we’re going to be presenting some conversations we had with scientists in the field of natural products. So, it’s a … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, … every environment you can think about.   DAN: What kind of genomic resources are available these days for the natural …

… this gap, by tracing the evolution of a specific enzyme family called aminotransferases (ATs). These enzymes play a … Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley … National Laboratory (Berkeley Lab). He completed this work with collaborators at the University of Wisconsin-Madison as …

… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute … we nurture in our workplace and seek to establish with our stakeholders. In working toward a shared vision … Fagnan, Chief Informatics Officer Len Pennacchio, Deputy of Genomic Technologies Axel Visel, Deputy for Science Programs …

… The Community Science Program Large Scale call is focused on genomic science projects that address biological functions … and predictive biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research … for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of …

… The Impact Understanding how individual microbes interact with each other in a community, and characterizing their … changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of hard-to-culture … to high (596 genomes) complexity. The environmental datasets included metagenomic data from Crystal Geyser in …

… book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational …

… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available … search environmental data, they developed a two-stage metagenomic detection pipeline: First, they scanned over 26,000 … systems for energy and other applications. All annotations, comparative tools, and visualizations are publicly available …

… wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls … the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire …

… FY2025 Spending Profile The JGI is funded primarily by the DOE Office of Biological and Environmental Research (BER), a program within the DOE Office of Science. …

… week is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and … early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …