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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… proposals have been  approved through the annual  Community Science Program (CSP) call of the U.S. Department of Energy … the  DOE Systems Knowledgebase (KBase) , a free, open source data science platform that allows users to explore … to crowdsource antimicrobial discovery for the control of plant pathogens, partnering with 600 instructors worldwide …
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Microbiome Data Science: Understanding Our Microbial Planet
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Single Cell Research Group
… described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial metabolism towards a … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … Director of Product and Market Development, Twist Bioscience Scott Clingenpeel: Industrial Hygienist, Berkeley …
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Natural Prodcast Episode 20: Brian Bachmann
… to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian Bachmann … joining Vanderbilt who were doing drug discovery and neuroscience and other areas that were being very successful and … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really …
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Natural Prodcast Episode 2: The Primer, Part 2
Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, … second episode of the Natural Prodcast. This is part 2 of our “primer” episode, so if you ended up here somehow … and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … these datasets, researchers made a pan-genome containing four  B. hybridum  genomes and many  B. distachyon genomes. …
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SPRUCE-ing Up Science
… expertise, a combination of biology and computer science, to reveal clues about how microbial and bacteria … sitting on the [Walnut Creek] campus … It was a resource-rich environment,” Lawrence said. While interning, he … distilling complex things … they really just help get your point across as quickly as possible,” he said. After …
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New Lineages of Life Group
Our research is focused on the discovery and … in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … an expanded complement of translation system components. Science, 356 (6333), 82-85 Schulz et al. (2016) A …
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Synthetic Biology Lab
… applications group. The DNA synthesis and assembly group: Our production group operates as user facility that aims to … assembly technologies to the broader community.  We focus our efforts on integrating database mining and sequence … including PacBio and Illumina.  The synthetic biology user science group: The applications group is focus on developing …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that … roots: friends, enemies or frenemies? … Datasets … From our partners … Behind the Paper …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art … synthetic biology review process .  … Proposers are encouraged to review the JGI’s sample requirements . Samples … design, please contact Tanja Woyke, Deputy for User Programs. Technical and Scientific Leads will also be …
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Natural Prodcast Episode 15: Katherine Duncan
… into secondary metabolites? Kate Duncan: So I always liked science in school. I wouldn’t say I was one of these people … so I have an undergraduate in chemistry. Now when I was in fourth year, we had a choice to do an integrated master’s … years to improve gender equality of people entering science programs. So actually, the number of women entering science …
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