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Simon Roux
… include the development of novel computational tools to identify virus sequences, the design of new experimental … ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an …
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JGI announces second round of 2023 New Investigator awardees
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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Natural Prodcast Episode 8: Eric Schmidt
… things that he worked on was he worked on how very beautiful sea slugs that eat sponges concentrate those toxic … But, say, the last time I checked, it was on the order of 10,000 species. And whenever you’re talking about a new … introduction, and I’ve been working with him for the last 10 years in this area. ALISON:  Just a clarifying question, …
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Tanja Woyke Elected to American Academy of Microbiology
As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this group expanded 10-fold, offering the opportunity to refine the phylogenetic … the AAM Fellows in this cohort. Go here for the full AAM news release. Woyke is also one of the organizers for the …
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A Plant Root Atlas for Tracking Developmental Trajectories
… patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with … . Dev Cell. 2022 Feb 28. S1534-5807(22)00033-8.doi: 10.1016/j.devcel.2022.01.008 Relevant Links: Single-Cell Data Viewer Tool on Phytozome Biosciences News:  Plant Single-Cell Solutions for Energy and the …
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Products
… vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs 5-10kb in size Single gene … transcriptome or de novo assembly), DGE, alignment files 91/126 Metabolomics Polar metabolite analysis Relative … metabolites and unidentified features in spectra. 167/214 Metabolomics Non-polar metabolite analysis Relative …
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Microbiome Data Science Team
… of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of … from the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and … Reveal Thousands of Small, Novel Genes. Cell 178(5):1245-1259 Nayfach S, et al, (2019) New insights from …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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John Vogel
… he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual … its diploid progenitors. Nature Communications 11 (1), 1-16  https://doi.org/10.1038/s41467-020-17302-5 Varoquaux, …
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Marine Microbe Contains Multitudes
… and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii … was supported by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and Betty Moore Foundation grant …
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A Collaboration to Improve Plant Genome Annotations Across Species
… targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental …
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