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… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … To find an explanation, his team tracked the thousands of bacterial and archaeal species using a DNA-based array …

… Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … (lightning talk): “Effect of drought on soil microbial metabolisms driving carbon allocation and volatile organic …

… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed … shotgun sequencing. The team first tested the approach on bacterial laboratory models to set a reference for its … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …

… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single set of chromosomes, are available. The genome assemblies … ran the gamut of sequencing technologies, from making a bacterial artificial chromosome library to long-read …

… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily in the … with the JGI. Working together, they found most bacterial genomes from water and soil communities were at …

… . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes (they are “polyploid”) and their complex … To create this reference sequence, the team relied on bacterial artificial chromosomes (BACs), vectors that can …

… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in support of user science.  Capabilities offered by the platform are a …

… University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … List of pubs available on NCBI … Implementation of the Index of Cell Identity as an R package … Selected Publications … Software …

… at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …

… human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large … the JGI Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes …

… closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s … Methodologies workshops. In 2018, Dr. Fagnan was part of the Gordon Bell prizewinning team at the Supercomputing …