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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … green algal genomes using Chlamy as a reference for functional annotation, including Chromochloris zofingiensis …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility … His current research focuses on the evolution, ecology, genomics and function of microbes and microbiomes, especially those found …
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First Monoploid Reference Sequence of Sugarcane
… and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes … genomes are more difficult to sequence and assemble, in turn limiting the use of modern, genomic breeding in … used to define a minimum tiling path of sequences in a single contiguous region. The JGI sequenced half of the …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his … bacteria, fungi, and plants. His team is also developing single-nuclei sequencing methods to characterize gene … diverse plant tissues. Dr. Baumgart focuses on expanding functional genomics capabilities through process automation …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  …
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A Community Resource for Secondary Metabolite Researchers
… Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most living creatures for energy, growth and reproduction—most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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VEGA Symposium
… Lab Attendee – $250 Student – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – … Hosted by the DOE Joint Genome Institute, the 5th Viral EcoGenomics and Applications (VEGA) symposium will take place … understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity toward …
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Introducing New Members of the JGI User Executive Committee
… “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the UEC – go here … He also wants to assist JGI in extending its activity-based cell sorting pipelines to further the link between cellular … review procedures and the organization of the JGI Annual Genomics of Energy & Meeting. Any investigator who has been …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | … with GENESPACE, a computational tool for comparative genomics.   With a more robust reference genome, researchers …
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JGI announces 2024 New Investigator portfolio
… The JGI is eager to work and share our tools with a widening circle of researchers. That’s why each year we look for novel research projects — aligned with DOE missions and from … not led any previously-accepted proposals — through the New Investigator call under our Community Science Program . …
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Massie S. Ballon
… and collaborators.  Ms. Ballon is a molecular biology-trained science communicator with extensive experience shaping compelling narratives for diverse audiences. In her prior role as a … Click to see the coverage of JGI-enabled science highlighting user research, newly accepted proposals, and outreach …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth … Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant … to be where we’re going to level off. And that’s in a single lifetime, right? Or maybe two generations. And so, …
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