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Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … Because most microbes cannot be cultivated under laboratory conditions, their genomes can’t be sequenced using … Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the environmental …

… crust that emit hot, mineral-rich water. These vents are too deep in the sea to get any sunlight, and yet they still support a unique … Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, providing authors a more …

… 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI … and Energy Leadership … Novak, V, et al. Reproducible growth of Brachypodium in EcoFAB 2.0 reveals that nitrogen … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …

… of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has further confirmed by …

… over two billion years ago. A team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, communally, in microbial …

… exploring a dark room with a flashlight, only able to clearly identify what falls within that single beam. When it comes to microbial communities, scientists have historically been … — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights …

Phytozome workshop held during the June 2022 CROPS Conference … at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of …

… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a changing planet. Mo Kaze is a University of … and metabolism, work on which she is expanding with her study of microbes in California’s manmade water transport …

… how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first step in the … the dice. There’s some evidence to support the idea. Study coauthor Stephen Nayfach, a JGI bioinformatics …

… learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … nutrients from decaying organic matter (saprobes), and many plant pathogens known to infect most major food crops and … clusters showed a >95 % accuracy in correctly predicting plant pathogens (blue) vs saprobes (green). (From Haridas S …

… that showcase our collaborations and capabilities to enable great science that will help solve energy and … In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel technique to … from individual environmental cells. The proof of principle study built off earlier approaches and offered a way for …

We count on livestock for food and fiber, but raising these animals also … from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those microbial methane-makers. Eventually, that …