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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … Wow. It’s all happened so fast. I mean, in terms of human evolution and knowledge, like discovering that the ocean is … the most effective application, of marine molecules in general. DAN UDWARY: Maybe can you explain to our audience …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to …
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A User-Centered Approach to Accessing JGI Data
… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … the Data Portal and  Genome Portal will continue to run in parallel for now. Eventually, he added, the Genome Portal …
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Network Modeling of Complex Data Sets
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … nearby forests with the right tools to track infection. The parallel development of the SODmap Mobile app enabled SOD …
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Building Sphagnum Genomic Resources
… Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … National Laboratory make the case for  sphagnum as “an unparalleled model system for ecological and evolutionary genomics .” Understanding the nature and …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… Streptomyces are nature's chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant under … the team mapped how the bacterium redirects its energy, building blocks and regulatory machinery toward chemical … This work conducted by the U.S. Department of Energy Joint Genome Institute …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA …
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In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes … plant variation for future analysis and discovery. “We're building the data sets that are needed to build the … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … in sustainable agriculture and clean energy. These evolutionary strategies that helped plants thrive under …
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