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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers …
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Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Natural Prodcast Episode 18: A CSP Primer
UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for … I think for Natural Prodcast, I think the question that generally comes up that people come to me asking like is– … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper … event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and even more ancient gene transfers from …
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Natural Prodcast Episode 19: Bill Fenical
… of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill is a pioneer … the most effective application, of marine molecules in general. DAN UDWARY: Maybe can you explain to our audience … very different things. Some were new orders, certainly new families. And we saw exactly how they fit into the scheme of …
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Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici.
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A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy.
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in …
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Chapter Seven Phylogenetics and Phylogenomics of Rust Fungi
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