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First Monoploid Reference Sequence of Sugarcane
… difficult to sequence and assemble, in turn limiting the use of modern, genomic breeding in these crops. For diploid species, sequencing programs generally focus on a genotype with two identical sets of chromosomes to … successfully assembled a first monoploid reference sequence using a targeted approach that focused on the gene rich part …
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Promoting the Power of Viral Metagenomics
… have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that infect organisms much smaller than humans, like … at all.  In fact, even in non-pandemic times such viruses are well known to play major roles in a vast range of …
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JGI announces 2023 CSP Functional Genomics awardees
… functional genomics research from potential users who need help translating genomic information into …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… (thermophilic) microbes are of interest for their potential use in number of biotechnological applications. Molecular … technology that enables researchers to generating thousands to millions of copies of a particular DNA sequence from just a few pieces of DNA. Summary The extreme environments …
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JGI announces 2024 Functional Genomics awardees
… Tapping into these functions allows researchers to use them for engineering applications in support of … capture, enhancing atmospheric carbon sequestration into sustainable biomaterials, and developing high-throughput …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… bacterial interactions with animals and plants, or cause metal corrosion in oil pipes. Scientists have tried to … require external illumination, making them difficult to use inside deep tissues. Additionally, all plants, many … need external illumination to produce a signal, making them useful in a wider range of environments. This new technology …
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Matt Blow
… In this role he supervises the Genome Assembly, QA/QC, and User Support Analysis teams. Together, these teams provide analysis support and R&D for production and user science. He received his Ph.D. from the Wellcome Trust Sanger Institute and Cambridge University University in …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… will help solve energy and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the … microbes like bacteria, algae and protists, all kinds of viruses impact many ecological processes, including carbon cycles. “Whether or not you planned it, viruses are most likely in your system and in your data, and …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial … chemical production. The Science Soil bacteria in the genus Streptomyces are nature's chemical factories. They hold … , scientists found that adding salt to the growth medium caused Streptomyces coelicolor to activate multiple chemical …
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Styling for Safety: PPE, It’s the JGI Way
… is worn to minimize exposure to hazards that can cause workplace injuries and illnesses.  PPE or Personal … is worn to minimize exposure to hazards that can cause workplace injuries and illnesses. These injuries and … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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SIPs with Standards
… Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This episode, Rex … SIP, more standardized -- more reproducible, more reusable, and more insightful, for the future of studying …
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Webinar: Introducing the BioSANS capability
… instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, EMSL’s … “Solar Energy Conversion in Cyanobacterial Membranes” Marcus Foston, Washington University in St. Louis on “Integrated … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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