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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … began to offer a window into viral existence. Along with highlighting the viruses in a given sample, … and grades their quality based on completeness. Along with expanding the viral diversity that IMG/VR features, …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… of two C. citriodora subspecies broaden understanding of the terpene synthase gene family across eucalypt … of terpene synthesis in plants will be important for alternative fuel development in the future. Summary Though the … Corymbia are more abundant in the drier parts of Australia with lower quality soils and even in the desert areas with …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and … is found in nearly all types of bacteria and interacts with cell signaling networks that control many basic … fluorescent biosensors before, but such sensors require external illumination, making them difficult to use inside deep …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  … such tools has been a collaborative effort. For example, with support from the  Exascale Computing Project , the JGI — along with the National Energy Research Scientific Computing … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make … work complements efforts to further develop sustainable alternative approaches for manufacturing bioproducts and …
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Building Wet and Dry Lab Skills
… the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and … undergraduate interns Tamyra Long and Zyiah Mikes worked with mentors Yi Zhai and John Vogel from the Plant … there was a new aspect to the project - they also worked with Sharon Greenblum from the User Support Analysis team to …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, … core foundation of robust mass spectrometry workflows for polar and nonpolar metabolite analysis, creation of large … over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists … simulation and coarse-graining of biological complexity with NFsim. Nature Methods 8, 177–183 (2011).  …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their … using emerging single-cell characterization technologies (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … Implementation of the Index of Cell Identity as an R package …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed the … to learn more about the program's areas of focus, major initiatives and more.  …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI …
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