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A Plant Root Atlas for Tracking Developmental Trajectories
… the journal  Developmental Cell and provides a community resource that could help researchers track cell development … of different cell types.” His contribution to the paper also aligns with his DOE  Early Career Research Program (ECRP) … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Better Genome Editing for Bioenergy
… goal of producing sustainable fuels from alternative sources. Moreover, the team says the approach they used to … CRISPR-Cas9 relies on RNA with a short guiding sequence (20 bp) that directs the endonuclease where to cut, but these … The team was thus able to measure sgRNA effectiveness from its lethality and choose only the most reliable sgRNAs for …
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Cultivating Symbiotic Antarctic Microbes
… in environmental processes (related to interactions of soil-sediment environments, water and air-atmosphere with … to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, … larger genome sizes and their cells were not observed to associate with host cells. In the  Proceedings of the National …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this … Sanger Institute and Cambridge University University in 2005, where he studied RNA editing and cancer genetics. Dr. … Bowers et al. 2024. scMicrobe PTA: Near Complete Genomes from Single …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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A Powerful Technique to Study Microbes, Now Easier
… help process experiments that measure microbial activity in soil. Now, the researchers and robots have made these …
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A Community Resource for Secondary Metabolite Researchers
… publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites are useful in a … gene clusters and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is … with each other, share annotations and collaborate on solutions.  Compared with past efforts at the JGI, like …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With …
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Gene Expression: From On-Off Switch to Dial
… in an organism. The experiment was led by Hal Alper, professor and associate chair at the University of Texas, Austin, and … versatility of this novel technique, Alper and his team also applied this method to a production-based scenario, in … This work was funded by the Air Force Office of Scientific Research under Award No. FA9550-14-1-0089, the …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… agriculture – such as efficiently using dwindling water resources and restoring and maintaining healthy soils – are at the heart of sustaining food and bioenergy … producing bio-based plant nutrition products that target soil enrichment, is partnering with the U.S. Department of …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated … He has worked at several renowned institutions, developing solutions for large-scale sequencing projects and data … BS in Electrical Engineering, University of New South Wales, Australia; MS in Computer Science, University …
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