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JGI Scientists Pen Genome Watch Articles
… .  The latest article, published January 27, is about engineering plants and their microbiomes for more … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Matt Blow
… Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  … and during Nitrogen-Fixing Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and plasticity in …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Applying Viral Genomics Expertise to Understanding the Human Virome
…  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to better understand the viruses … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and … viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly advanced the field by …
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Game On: High School Students Drive Everglades Metagenomics Study
… (metabolizing) methane within the Florida Everglades ecosystem. There are no roads or real human traffic through … to assist them with soil sample analysis for nitrogen and carbon concentrations along with water content. The class … for water content, nitrogen concentration, and organic carbon concentration. From Field Studies to Publication …
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … families and novel functions in as-yet unveiled microbes. Harnessing the collective power of more than 26,000 … environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing something interesting …
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Leo Baumgart
… microsporus." Nature Communications 16, no. 1 (2025): 3843. McCahill, Ian W., Logayn T. Abushal, Bahman Khahani, … Leo, William Mather, and Jeff Hasty. "Synchronized DNA cycling across a bacterial population." Nature genetics 49, …
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Frederik Schulz
… ecological roles of microeukaryotes in terrestrial ecosystems. Additionally, Dr. Schulz is leading a DTRA-funded … temperate dimictic lake. Microbiome . Camargo A. et al. 2023. Identification of mobile genetic elements with geNomad. … of metagenomic assembly and binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… Ray oversaw the acquisition and renovation of Building 310, adding the crowning piece of the entire 80,000 square … Associate Director of Science; Todd Anderson, Biological Systems Science Division Director; and Ramana Madupu, BER … Institute and Deputy for Operations Biological Systems & Engineering Division. “I feel so lucky that I get to have …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Group helped better-understand what the sulfur-oxidizing, carbon fixing bacterium was doing in the Guadeloupean … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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An Earth Month Look at Sustainability Efforts at the JGI
… program manager for  Sustainable Berkeley Lab (SBL). By 2030, Berkeley Lab  aims to cut its greenhouse gas emissions … where 90% of landfill waste is diverted to compost or recycling. That initiative is the result of a partnership with … also implemented the use of Klaatu, a freezer management system that monitors energy use and helps detect problems …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… environments, actinobacteria play roles in both the carbon and nitrogen cycles, break down plant mass (think … BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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