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Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Three pairs of fungal Trametes strains isolated from distinct geographic origins show conserved genomic features and adaptive response to plant biomass
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Finding the Fermenters
… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … by the DOE Biological and Environmental Research (BER) program to enable scientific discovery in support of the DOE … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Research (BER) and is a contribution of the Scientific Focus Area “Phenotypic response of the soil microbiome to …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… expands the global diversity of large and giant viruses. While the microbes in a single drop of water could … they are found everywhere, comparatively little is known about viruses, much less those considered large and giant. … senior author  Tanja Woyke , who heads JGI’s  Microbial Program . The team mined more than 8,500 publicly available …
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New and Improved: Eucalyptus Reference is Now Accessible
… Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | … are 900 species of eucalyptus. The trees are fast-growing plantation crops that supply wood and fiber for various … assembly generated through the JGI’s Community Science Program will help support targeted genetic breeding of …
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Steven Wilson
… lifecycle of activities at JGI - proposal submission and review, project and work order creation and management, … and our institutional website.   Mr. Wilson brings a user-centered approach, an ability to work with others to …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a … as a principal investigator through the Community Science Program — as well as through the Facilities Integrating … Alternate Metabolic Pathways And there is something special about these new lineages recently tied to methanogenesis. …
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … analyzed.” Emiley Eloe-Fadrosh, head of the  JGI Metagenome Program and senior author on the study elaborated on … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode …
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A Natural Mechanism Can Turbocharge Viral Evolution
… The Science The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using proteins … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National …
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