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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for …
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Toward More Efficient Artificial Photosynthesis
… The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw materials including … from the atmosphere than current natural processes and use it as a sustainable resource for making high-value … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but … To access the genomes of uncultured  microbes , scientists usually employ two different methods; shotgun metagenomic … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Natural Mechanism Can Turbocharge Viral Evolution
… The Science The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using proteins … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at …
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Mike Sneddon
… and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled … large-scale genomics and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific … a laboratory information management (LIMS) system. He previously led the NGS Software team and metagenomic data platform …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short Palindromic Repeats … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then …
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Streamlining Regulon Identification in Bacteria
… sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part of the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual … The 2020 JGI-UC Merced interns and mentor/s: Brendan Blasius & Guohong “Albert” Wu Edgar Jimenez & Sharon Greenblum … Li Lei and Virginia Scarlett Jasper Toscani Field & Brian Bushnell Lesly Lopez & Li Lei Lorenzo Scaturchio & Benjamin …
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Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… yield and climate resilience of algae — for potential use as biomass or in biomass conversion to biofuel. Summary … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and an FRQNT Team grant to C.L. The analyses were conducted using Digital Research Alliance of Canada-Compute Canada …
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Atif Shahab
… led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, … analysis and reporting of sequencing projects and their status. Mr. Shahab has extensive experience in Laboratory …
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