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… mentors TBK Reddy and Dimitri Stamatis, Porting XML/Python Based Quality Control to Database/Java Based Process in Gold … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for …

… (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted a … on “Integrated Multi-omics Analyses for the Prediction of Metabolic Flux in. Lignin Conversion”       … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …

… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more … analysis led to the identification of 328 “high quality” (based on completeness) diverse new virophage genomes …

… On September 1, JGI held a JGI Engagement: Pro Tips for Successful … and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … how competencies can be built. We recommend exploring how KBase (www.kbase.us) can support biological data analysis. It …

… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint … experience funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns … the plants and extracting DNA. They also analyzed 16s amplicon data to determine microbiome composition. This …

… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 … was the feedback from the graduate student interns; “it changed what I want to do with my life,” “I can code.”  …

… alga into a powerful platform for developing ​​bio-based industrial products.    The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … is remarkably simple with only 7,500 genes, compared to 17,000 in the model alga Chlamydomonas . The genome is also …

… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to the 2014 Eucalyptus grandis reference genome that has been widely … both haplotypes, meaning it separately represents the sets of chromosomes inherited from each parent. It also has …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … has resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated proteins …

… and supporting applications that span the lifecycle of activities at JGI - proposal submission and review, … make data available to the public, and our institutional website.   Mr. Wilson brings a user-centered approach, an … pushed instrument run information directly into the database rather than depending upon error prone, manual input by …

… could one day help other organisms survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and Claudia Coleine are …

… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese … atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the …