Search

… Publications …

… over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced … DNA-SIP for helping identify active micro-organisms within complex communities, and custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and …

… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome … program, and on how plants coordinate their gene expression with light and temperature oscillations throughout the day. … Selected Publications …

… genomes in the JGI MycoCosm portal. In 2018, he launched scale-up of algal geomics and PhycoCosm portal. Dr. … Sci U S A. 118(18):e2019855118. Miyauchi et al (2020) Large-scale genome sequencing of mycorrhizal fungi provides … Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants.  Science, 2011; 332: …

… Selected Publications …

… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the … Selected Publications …

… a partnership between JGI and the Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley … Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics … to test those hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein …

… T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. … 59(1), 33–42. Bowen, B., & Northen, T. (2010). Dealing with the unknown: metabolomics and metabolite atlases. … Selected Publications …

… positions at University of Florida and UCLA he has worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a deeper understanding of … al ., gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes …

… switchgrass transformation pipeline and, in collaboration with industrial partners, generated hundreds of transgenic … tolerance, and the mechanisms by which plants interact with their microbiomes. In addition, his group conducts … in the Brachypodium distachyon pan-genome correlates with population structure. Nat. Comm. 8(1), 2184 doi: …

… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s … In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on …