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… eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed … of community driven science for JGI Plant Flagship Genomes and DOE relevant cellulosic feedstocks. He provides … scientific project management for the reference eukaryotic genomes produced by the DOE Joint Genome Institute and the …

… extensive experience in Laboratory Information Management Systems (LIMS), bioinformatics, and genomics data …

… plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature … Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the first version of … , which currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower …

… Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of environmental … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … the world, finding over 125,000 partial and complete viral genomes. That study multiplied the number of known viral …

… short audio production, we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the University of Hawai’i at … I recently caught up with Karolina at the Plant and Animal Genomes, or PAG conference, when in-person meetings were … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… but it also requires a deep understanding of biological systems. The JGI strategic plan lays out how users and the … insights into a vast range of organisms and ecosystems. These kinds of data could open opportunities along … the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms or environmental DNA, and …

… my mentor looked over and was like, “why are you explaining phylogeny to people who have been working here for like …

… Genome R&D Group and is one of more than 100 scientists and systems engineers involved in computational work at the JGI. … function (Héctor García Martin of Berkeley Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew … Kristofer Bouchard, neuro- and data scientist in Biological Systems and Engineering / Computing Resources Division …

… are at fending off the infection, and how long this evolutionary arms race has been going on.  Answering these … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… Program in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team … the Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE) (ANR-11-LABX 0002 01 to F. Martin), JGI …

… , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science Graduate … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … these DGRs. DGRs were found in single microbial and viral genomes, as well as genomes sampled all at once from the same environment, … and through a Challenge Grant from the California NanoSystems Institute at the University of California Santa …