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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… FY2024 EMSL-JGI FICUS collaborative proposal call . Letters of Intent for the joint call are due March 7, 2024. The FICUS call allows researchers to combine the power of genomics and molecular characterization from the JGI and … questions, contact  Christa Pennacchio , Project Management Office. For questions about the appropriateness of projects …
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & … a global analysis of the diversity, distribution, and evolution of virophages.” Lead author David Paez-Espino  …
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Neha Varghese
… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides …
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2025 Progress Report
… Mi Yan, Deanna Beatty)    Vision  Lead AI-driven genomic innovation to advance biotechnology. Mission  As a U.S. Department of Energy Office of Science user facility supported by the … program, the Joint Genome Institute provides advanced genomic capabilities, large-scale AI-ready data and …
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Partners
… our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … their expertise in developing and managing public viral genomics resources such as analytical tools and data … developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire … the families,” Kyrpides said. Yet, “almost 20 years of metagenomic data and metagenomic analysis, and still there has …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could … more.  Microbes excel at recycling the abundant miscellanea of their surroundings. Case in point: for us, the smell of the ocean simply signals we’re near the beach. For …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang and … This portfolio accelerates bioenergy innovation through genomic discovery across diverse organisms and ecosystems. … barcoding systems to optimize microbial bioreactors. This genomic research creates new opportunities for …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … in flowering plants, or angiosperms, suggesting they are evolutionarily conserved across plant lineages. They … plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  Recently , researchers used population genomics to find that while archaeal hitchhikers may often …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … tool will make the right cut, researchers created a set of guide RNAs that were effective against 94 percent of the genes in a lipid-prolific yeast. The Impact The team … MB) and NSF  1706545 (IW). HA and JW were supported by the Office of Naval Research under grant  N00014-15-1-2785 . JW …
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