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An Integrated Dataset to Understand Ecosystem Interaction
… and metabolites associated with the tree’s stress response. Finally, using transcriptomics, researchers were able to … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic profiles — combined offers the global …
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JGIota: Looking Back at Methane-Making Microbes
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Gut Fungi: Unexpected Source of Novel Chemicals
… National User Facilities , with the stroke of a single proposal. The next step for the team was to try to identify … Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). CLS is also supported by a National Science …
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Jeremy Schmutz
… Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement … simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, … Plott, C., MdS Hossain, J. T., Lovell, J. T.., et al. 2023. JGI plant gene atlas: an updateable transcriptome …
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Yasuo Yoshikuni
… of citramalate., Metabolic Engineering Communications , 2023 Wu et al. Structural characterization of a soil viral … - a functional chitosanase., Nature Communications , 2023 Zhao and Yoshikuni, Discovering untapped biochemistry in … Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β-Linked GlcNAc …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… which is known as the aerial surface of plants, is a comparatively understudied area of forest ecosystems as past … project in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a UC Merced graduate student in Carolin … Science Foundation (NSF) under grant DEB-1442348. The work (proposal:  https://doi.org/10.46936/10.25585/60000936 ) …
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Kjiersten Fagnan
… Computing, Networking, Storage and Analysis, 2018, pp. 717-730, doi: 10.1109/SC.2018.00060. Wood-Charlson, E.M., … enabling microbiome science. Nat Rev Microbiol 18, 313–314 (2020). https://doi.org/10.1038/s41579-020-0377-0 S. …
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Integrating Experimentation with Data
… and visualization, through a collaborative, peer-reviewed proposal process—enabling researchers worldwide to explore …
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User Support
… the Work Initiation Process (WIP) interface. To submit a proposal, users must first log in (Note: new users of the … ). Once users are notified that their proposal has been accepted, the PMO will assist with … as needed Upon completion of all work associated with your proposal, your Project Manager will formally close out your …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… Ray oversaw the acquisition and renovation of Building 310, adding the crowning piece of the entire 80,000 square … roundtrip every day, conservatively estimated to be over 350,000 miles over 15 years). And for Ray’s prospective … to the ever-shifting landscape of funding Federal for programs, noted that “Ray is someone who just will get it …
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Alabama A&M Interns Access An Abundance of Knowledge
… I’ll be attending Alabama A&M University this fall for my master’s in plant soil science and my career focus is plant …
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Computationally Classifying Fungal Lifestyles
… Community Science Program (CSP) , as several approved proposals have contributed toward filling gaps on the fungal … Facility, is supported under Contract No. DE-AC02-05CH11231. The work was also supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes …
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