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… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which … time course data from two ecotypes of  Panicum hallii and multiple switchgrass ( Panicum virgatum ) experimental data. …

… besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from around the world. By … sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… a commonly-used process for studying microbial communities, with results published in the  November 2022 issue … Because microorganisms live in complex communities, like within soils or the gut, they are difficult to study … HT-SIP is a capability available to request through  the JGI proposal calls . …

… applications that span the lifecycle of activities at JGI - proposal submission and review, project and work order … sequence quality control and automation of microbial/metagenomic assemblies, portals that make data available to the … Wilson brings a user-centered approach, an ability to work with others to break down complex issues into achievable …

… two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … down hemicellulose. The authors think this might have to do with the differences in lifestyle: honey bees need ample … and analyzing the honey bee gut metagenome, which was done with the help of the US Department of Energy Joint Genome …

… Creek Featuring a casual, candid, C-level panel discussion with local industry leaders: Arvind Gupta , Managing … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …

… develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …

… in urine to create hydroxyapatite, a high-value biomaterial with a wide range of industrial applications. The team was … produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the JGI’s genomic capabilities with the Foundry’s nanoscale materials …

… be engineered. “Piloting access to this emerging technology with JGI users will enable us to assess CRAGE’s impact, … “Once you have a landing pad in a strain, you can deliver multiple types of payloads, such as individual genes, whole … part of the Community Science Program (CSP)  Functional Genomics proposal call. …

… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome …

… Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome … are available. The genome assemblies highlight the multiple advances in sequencing technologies applied to the … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how …

… Streamlined genome with precise gene targeting transforms oil-producing alga … alga naturally produces high amounts of oil and can grow with or without light. The relatively small size of its … than other algae, Auxenochlorella ’s reduced genomic complexity can accelerate the design-build-test cycle …