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New and Improved: Eucalyptus Reference is Now Accessible
… compared to the 2014 Eucalyptus grandis reference genome that has been widely adopted. The new genome assembly resolves … The new improved genome assembly generated through the JGI’s Community Science Program will help support targeted … help from researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … genomic capabilities. Summary In a project supported by the JGI Community Science Program, University of California (UC) …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… environments. The Science Cyclic di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that control many basic cellular functions. It plays an … cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic …
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Steven Wilson
… group is responsible for developing and supporting applications that span the lifecycle of activities at JGI - proposal submission and review, project and work order … align and reach the associated goals. Mr. Wilson joined the JGI in 2002.  A fter supporting the sequencing core at …
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How to Target a Microbial Needle within a Community Haystack
… for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Development of this protocol was enabled by the JGI’s  Emerging Technologies Opportunity Program . The ETOP …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist Hiroshi …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … metabolism from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science … organisms (symbionts) are transmitted between host generations, researchers investigated the role that bacteria … and experimented with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely … the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231 (SR, APC, SN).  …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is … produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the JGI’s genomic capabilities with the Foundry’s nanoscale …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the … over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the … Cornell University, NY Postdoctoral scientist, IBM Watson Research Center, Yorktown Heights, NY …
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