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A User-Centered Approach to Accessing JGI Data
… common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural … limited to: Public data: datasets associated with completed projects that are eligible for public release, have … For IMG & Mycocosm: Data that is associated with an ITS project ID (AP or SP) Q: What JGI Data Policy considerations …
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Six join FICUS program in 2026
… The JGI is excited to welcome six to the Facilities Integrating Collaborations for User Facilities (FICUS) … year 2026, in partnership with the Environmental Molecular Sciences Laboratory (EMSL) and other national user facilities. Focus areas for these projects include biofuels, biomaterials and bioproducts; …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted … determination as they came onsite. From data carpentry to science communications, their schedules were filled with … and their JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His … , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The United States Department of Energy … in bacteria. Proceedings of the National Academy of Sciences of the United States of America 109(3), 805–810 …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth … DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on … i.e. in January. She talked about her  Community Science Project proposal with JGI, in which she’s studying a special …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean … Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay … by passionate scientists working on interdisciplinary projects. I feel inspired to pursue a career in STEM. … to know you and provide all resources to excel in your project.”     Vicente Ramirez, UC Merced JGI Mentor: Albert …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … Methanogenic microorganisms therefore play a critical role in the global carbon cycle, and are of significant interest … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at … specific procedure.” The rapport they built during this project and others (including the dissertation that preceded … in genomes.” He’s working with Rokhsar on a newer genome project, and enjoys the fact that he can use what they’ve …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the … the benefit to society. Inspired by the Human Genome Project (HGP), and building upon the principles for open … ability of the principal investigators of approved JGI user projects to publish the primary report of their data without …
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Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in Microbiology at the Eberhard Karls … Scientist appointment at the Bigelow Laboratory for Ocean Sciences since 2012 and an Adjunct Professor at the … to learn more about the program's areas of focus, major initiatives and more.  …
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