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Tracing the Evolution of Shiitake Mushrooms
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … conducted by the US Department of Energy JGI (https://ror.org/04xm1d337), a DOE Office of Science …
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … draft genome for  S. fallax is already available on the  JGI plant portal Phytozome , and the S. magellanicum genome … P23117-B17, P25111-B22, P26392-B20, and I1628-B22), the JGI (CSP 605), the German Research Foundation (DFG, PE …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of … with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … Streptomyces species or related microbes can work with the JGI to apply the same integrated approach to unlock useful …
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Fungus Fuels Tree Growth
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  … Ecosystems (ARBRE) (ANR-11-LABX 0002 01 to F. Martin), JGI Community sequencing program project (CSP570, …
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and … to fit the needs of the dynamic environment that is JGI. Infrastructure built by his team is unbureaucratic and …
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Steven Wilson
… applications that span the lifecycle of activities at JGI - proposal submission and review, project and work order … align and reach the associated goals. Mr. Wilson joined the JGI in 2002.  A fter supporting the sequencing core at Exelixis Biopharmaceuticals as an intern, he joined the JGI as an Instrumentation Engineer where he added structure …
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Synthetic Biology Informatics Group
… develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the JGI’s genomic capabilities with the Foundry’s nanoscale materials research. As described in the JGI’s latest strategic plan, the Biomolecular Materials …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a … to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature … our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established …
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DAS Tool for Genome Reconstruction from Metagenomes
… genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … samples. The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in … challenges. In Nature Microbiology , a team led by longtime JGI collaborator Jill Banfield of the University of …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization … and currently leads the Viral Genomics group at the JGI to further explore the ecological and evolutionary …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based … 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced mass …
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