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Igor Grigoriev
… Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project … and PhycoCosm portal. Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Oh, the magical world of the cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the … microbes are no exception. Back in 2011, JGI-supported researchers published a paper in the journal Science. It …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a … in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides … to bioremediation efforts for decades. Identifying resident microbes that can help bioremediate toxic substances has led …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … a powerful generative model  now available to the global research community able to not just analyze but also create … available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… more than 10 papers, including two Nature Plants publications, in five years, have come out of the … ways of controlling the pathway enzymes, and thus evaluate changes to the pathway more quickly.  The JGI has also … on thiolases, a superfamily of enzymes found only in microbes, which make carbon-carbon bonds. This ability is …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. … Nature highlights the vast array of functional diversity of microbes through a novel approach to better understand … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly … show a long history of dynamic evolution and rapid changes in both genome content and structure following a … or C-fern, specifically has been studied in plant research laboratories and plant biology courses across the …
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Creating an Energy Market for Miscanthus
… What grass is a prized ornamental and a bioenergy plant? Meet … an attractive addition to your garden and a potential fuel for the future. But, to be competitive in the market, both energy …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … We acknowledge the use of deletion strains generated by Grant …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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Robert Bowers
… Bob uses single-cell genomics and metagenomics to explore how microbes influence people and the environment. This includes … studying the diversity, physiology and community ecology of microbes sampled from the natural environment. …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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