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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of viruses that infect not just crops, animals and humans, but also microbes whose presence or absence can …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part of the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a wildfire. The … to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration … General attendees: $500     Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory … The JGI and EMSL are U.S. Department of Energy (DOE) Office of …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … Antarctic lakes, some of which have salinities 10 times that of seawater. To shed light on the global biogeography in … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, … by passionate scientists working on interdisciplinary projects. I feel inspired to pursue a career in STEM. …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, …
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The endosymbiotic box of protective tricks
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied … data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … JEM and used resources at the DOE Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science … a genus of just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the … change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … with more than 15,000 secondary users who made use of our data. We completed 39,870 projects in FY24 We generated 871 …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial products.    … precise gene targeting in the genome in the November 2025 issue of The Plant Cell. Auxenochlorella is an …
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