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Building Wet and Dry Lab Skills
… on the plant microbiome. This year, however, there was a new aspect to the project - they also worked with Sharon … the User Support Analysis team to analyze plant microbiome data via programming languages like Python. The more … plants and extracting DNA. They also analyzed 16s amplicon data to determine microbiome composition. This gave them an …
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High quality draft genome sequence of Leucobacter chironomi strain MM2LBT (DSM 19883T) isolated from a Chironomus sp. egg mass
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High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2T (DSM 21788T), a valuable source of polysaccharide decomposing enzymes
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Waiting to Respire
… ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … Communications , two research teams joined forces and data sets to describe bacterial genomes for related (“sibling”) …
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Atif Shahab
… platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project … Management Systems (LIMS), bioinformatics, and genomics data management. He has worked at several renowned … solutions for large-scale sequencing projects and data analysis pipelines.  …
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A Plant Root Atlas for Tracking Developmental Trajectories
… and combining the information with previously published datasets. The work was  recently published in the journal  … a foundational data set that is now available through a new  single-cell data viewer that was collaboratively … Single-Cell Data Viewer Tool   …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and … the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to better understand the … Notable examples include CheckV , which assesses the quality and completeness of metagenome-assembled viral …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… in the real world. They estimated that a kilogram of high quality HAp from osteoyeasts would cost $19 to make, and it … $1.4 million annually.  The team is working on developing new microbial strains that can synthesize other bio-based … New Process Uses Microbes to Create Valuable Materials from …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… sites designed to collect long-term open access ecological data to better understand how U.S. ecosystems are changing.  … I need? A: Make a request through the NEON assignable assets program. Q: For a NEON Assignable Assets project, does … staying up to date via our website, social media, and newsletter. Q:  How would people find out about the NEON …
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Direct pathway cloning of the sodorifen biosynthetic gene cluster and recombinant generation of its product in E. coli
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Emiley Eloe-Fadrosh
… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … She also leads the DOE’s multi-lab National Microbiome Data Collaborative (NMDC). Prospective users with questions … Wood-Charlson EM, et al. 2020. The National Microbiome Data Collaborative: enabling microbiome science. Rev. …
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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