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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version … over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces … v12 links (e.g., to gene reports and organism information pages) will be seamlessly forwarded to Phytozome v13. Below …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… found in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you … and archaeal genomes that were created – these are Metagenome Associated Genomes, or MAGs. So these are genomes that were assembled from metagenomic sequence, metagenomic sequence being taking a …
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Jeremy Schmutz
… was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he … 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement … assembly and the post-genome computational analysis at HudsonAlpha. …
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Annual Meeting 2027
…   Save the Date: March 16–18, 2027 The next JGI Annual Meeting will be held in March 2027 at the Oakland Convention Center. Check this page as further details become available. Sign up for our …
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Natural Prodcast Episode 9: Roger Linington
… Yeah, that’s right. We were postdocs together in the mid 2000s, I guess. You were working for Brad Moore. I was … the idea that you could go internationally to do the next stage of your training and that there might be more to be … how best to begin. And so in the end, we did it in several stages. So we started out internally by making a list on the …
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Natural Prodcast Episode 5: Brad Moore
… Natural Products conference, which took place last January 2020 in San Diego. San Diego, of course, is the “home turf” … marine natural product biosynthesis and at the beginning stages of connecting molecules and genes. And then genomics … would spend time between our two laboratories doing metagenomics, some genomics. We were a little concerned …
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A Collaboration to Improve Plant Genome Annotations Across Species
… DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes … for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to …
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JGI Advisory Committees Code of Conduct
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Partnerships: Adopt-A-Genome
… recruit new talent for biosciences.  Adopt-a-Genome has: ~20 faculty from institutions across the country Efforts in … development and adoption of classroom modules Currently 206 genomes have been selected with 11 published manuscripts … some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them …
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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
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Plant Microbial Interactions Group
… 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z 10.1038/s41477-024-01666-3 10.1016/j.celrep.2023.112676 10.1016/j.devcel.2022.01.008 …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … Biosciences Associate Laboratory Director, of the 100-page document with over 200 actionable milestones. JGI … leadership role in a Microbiome Data Science effort (pages 37-39) and the launching of a Secondary Metabolites …
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