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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … these trophic guilds, this team focused on three main groups of fungi that appeared in all forests they sampled. …
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Strain Engineering
The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to … to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by … This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published in the  …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …
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CalTeach
CalTeach is a program for undergraduate majors interested in developing …
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Natural Prodcast Episode 18: A CSP Primer
… … DAN UDWARY: It’s been a while, but Natural Prodcast is back … And I think also the quality that we provide. So for fungal and for a lot of our eukaryotic genomes, all our … that one PI, but that have utility more broadly across a group of scientists, across the scientific community, that …
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Natural Prodcast Episode 16: Marcy Balunas
… … DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it … bacteria into the jelly coat to protect the eggs as they’re developing over about a month.  DAN: What are those bacteria … what we know is they’re quite selective in some way for antifungal activity. They are also, some of them, are …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint … One of the organisms that I studied in the past were a group of bacteria called the Frankia . And so the Frankia … of weird growths on livestock due to you know, bacterial or fungal infections. Yeah, okay. So he identified these things …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of … colors. I mean, where else in nature– and they’re not fungal. Where else nature can you go see colonies of … at this point. So no company would ever be interested in developing them, doing the substantial amount of effort to …
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy … it has a really interesting biosynthetic pathway because fungal genes are cool. And if you like fungal genes, you … small peptide. So at a certain point, a couple of different groups noticed that they could take all of these adenylation …
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