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Fungal & Algal Program User Advisory Committee
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FICUS-NERSC/KBASE
Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the … of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly …
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Natural Prodcast Episode 15: Katherine Duncan
… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by … experimental protocols, media recipes, plasmid maps, useful software tools, and more. We didn’t discuss it here, but you …
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Logos and Templates
The JGI Style Guide offers tips on JGI logo usage - please follow these guidelines. Logos JGI logo – stacked JGI logo – horizontal …
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Partners
Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close partnerships with other user facilities enable the ability to leverage their …
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA …
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Science Programs
The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the scientific impact of user projects, develop cutting edge approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …
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JGI Advisory Committees Code of Conduct
National Lab’s (Berkeley Lab’s) core values , which guide the relationships we nurture in our workplace and seek … transparently, and ethically; Act on behalf of the JGI user community rather than personal agendas; Treat all other … Visel, Deputy for Science Programs Tanja Woyke, Deputy of User Programs …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Natural Prodcast Episode 24: Jackie Winter and SMC
SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … of always working on natural products but just different tools and how to really access and manipulate these pathways … it’s– so far, so good. But we’ll add more hardware and more software as we need to go. JACLYN WINTER: You’re going to …
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Natural Prodcast Episode 18: A CSP Primer
… that the Joint Genome Institute is a “Department of Energy user science facility”, and so today what you’re going to … did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the …
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JGI Portals
Our data platforms are a key resource for the broader scientific … unified access to all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI … are provided to display annotation data from many common software tools, and from many users. It is also a place …
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