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JGI on the 2020 Highly Cited Researchers List
… Nature Biotechnology that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the world. Much of the data had been … for  M. sinensis can both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such …
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Mike Sneddon
… validated bioinformatics pipelines and a laboratory information management (LIMS) system. He previously led the … Sciences of the United States of America 109(3), 805–810 (2012).  Sneddon, MW, Faeder, JR, and Emonet, T. Efficient …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… ecosystems. Viruses rarely grow well in environmental samples brought back to a lab, because they often need … to replicate. Sequencing genetic material directly from samples sidesteps these challenges, since it doesn’t require … existence. Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of …
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When “The Blob” Made It Hotter Under the Water
… the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The Blob, … of British Columbia was already collecting ocean water samples when The Blob started. The samples were taken up and … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Taking Stock of the Known and Unknown Microbial Space
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … playing key roles in regulating global nutrient cycles. The information gained from understanding the interactions … recover MAGs by extracting data directly from environmental samples over the years have significantly expanded the known …
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Jeremy Schmutz
… Nature Genetics 46: 707-713. Paterson, AH et al. 2012. Repeated polyploidization of Gossypium genomes and the … Nature 492: 423-427. Bennetzen, JL & Schmutz, J et al. 2012. Reference genome sequence of the model plant Setaria. Nature Biotechnology 30: 555-561. The International Brachypodium Initiative. Genome sequencing and …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by researchers at the … portal Phytozome. The combination of field data and genetic information has allowed the research team to associate …
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Soil virus offers insight into maintaining microorganisms
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (Berkeley Lab). Using 5,000 images of crystalized samples cloned and synthesized by the JGI, scientists have … and cloned both chitosanase genes and mutants. DOIs of publicly available chitosanase sequences were retrieved using …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … energy generation and environmental characterization and cleanup. The JGI provides integrated high-throughput … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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JGI Launches Latest Strategic Plan
… to begin a month later. In parallel with the intricate move preparations, the JGI has released its newest 5-Year … our Berkeley Lab colleagues, particularly with the other user facilities including the Advanced Light Source, the Molecular Foundry, NERSC and ESnet, as well as externally to prospective partners to generate awareness of and …
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A Step Toward Controlling Soybean Rust
… of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … energy generation and environmental characterization and cleanup. The JGI provides integrated high-throughput … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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A Sorghum Pangenome Opens More Doors to Discovery
… Plant Science Center.  This work is the result of an international collaboration, beginning with the work of the late … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … from a much broader view than ever before. With this information, researchers can link genetic variation more …
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