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… simulation and coarse-graining of biological complexity with NFsim. Nature Methods 8, 177–183 (2011).  … Selected Publications …

… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome … program, and on how plants coordinate their gene expression with light and temperature oscillations throughout the day. … Selected Publications …

… approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the … cycle in wild populations of green sulfur bacteria with long standing virus-host interactions. The ISME Journal … Selected Publications …

… Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants.  Science, 2011; 332: … Selected Publications …

… Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … research is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle … D, et al.  SIMILE enables alignment of tandem mass spectra with statistical significance. SIMILE enables alignment of …

… in situ functional activities of specific microbial groups within complex communities.  The Microscale Applications … and enable processing of samples that would not be possible with traditional approaches. … Volland et al. 2022.   A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound …

… Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics … to test those hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein … Ware D, Blaby-Haas CE. (2024) Functional diversification within the heme-binding split-barrel family. J Biol Chem  …

… T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. … 59(1), 33–42. Bowen, B., & Northen, T. (2010). Dealing with the unknown: metabolomics and metabolite atlases. … Selected Publications …

… A. et al. 2023. Identification of mobile genetic elements with geNomad. Nature Biotechnology . Schulz et al. 2022. … Selected Publications …

… positions at University of Florida and UCLA he has worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a deeper understanding of … Ian Blaby on Google Scholar Grosjean et al ., A hemoprotein with a zinc-mirror heme site ties heme availability to …

… switchgrass transformation pipeline and, in collaboration with industrial partners, generated hundreds of transgenic … tolerance, and the mechanisms by which plants interact with their microbiomes. In addition, his group conducts … in the Brachypodium distachyon pan-genome correlates with population structure. Nat. Comm. 8(1), 2184 doi: …

… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on supercomputing hardware and worked closely with staff to understand the data-intensive nature of JGI …