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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, … of saprotrophs, mycorrhizal symbionts, and pathogens, regardless of whether a sample came from the soil below a pine … a tremendous community effort, with over 100 researchers who nominated species for sequencing and then sent DNA and …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission … fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. Book a session …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… his team  announced in  Nature Microbiology an important addition to the synthetic biologist’s toolkit: a technique for  … multiple types of payloads, such as individual genes, whole pathways, genome-editing tools, and reporters.” … advantage of their joint metabolisms. Because, together, microbes can be used to create compounds more efficiently …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership … transcriptome projects such as Expression Atlas and PPRD could help with understanding gene functional roles, but … Juenger and his postdoc Xiaoyu Weng from Univ. of Austin, who previously led work on  Arabidopsis and  Panicum hallii …
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Partnerships: Adopt-A-Genome
… to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome Institute, builds upon … educators from a broad range of disciplines up-to-speed with some of the latest developments in microbial genomics, …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular … as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley Laboratory, and … his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a rare …
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How to Submit Sequencing Samples
… to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports … QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many … spreadsheet to the PM (or completes the form online) PM submits metadata to JGI database for shipping approval  All …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… at the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of … workshops on science communication and technical writing while also making new connections with both …
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Nick Everson
… which include the Safety, Finance, Human Resources, Facilities, IT, Shipping and Receiving, Lab Automation, and … 2007 to 2012, overseeing all financial and logistics activities.  He returned to the Joint Genome Institute after … of JGI operations infrastructure, including space and facilities, finance and procurement, human resources, safety, and …
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JGI Advisory Committees Code of Conduct
… of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s … and seek to establish with our stakeholders. In working toward a shared vision with members of the JGI advisory … stakeholders range from scientists to members of the public whose tax dollars support our continuing contributions to …
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The Case for Conservation
… Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female … the U and V sex chromosomes of fire moss comprise a full third of each moss genome, and are almost four times the size …
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Mike Sneddon
… Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and … portals, tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. Sneddon is an accomplished leader in … Computational Biology and Bioinformatics from Yale University. …
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