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… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from additional parents or …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI …

… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … work and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular features to … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …

… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  …

… Uncovering associations between plant roots and fungi that can help … analysis identified fungal gene families that help determine if these fungi act as friends or foes. The Impact … communities comprised of fungi and bacteria can thrive in plant roots. They play key roles in maintaining the …

… of the University of California, Santa Barbara. They join eight other JGI users already serving on the UEC – go here to view the full roster of members. … CSP and the JGI-EMSL FICUS programs and brings expertise in metagenomics and novel applications for long-read DNA …

… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell University, NY PhD in … Publications … Award, National Cotton Council 2009 Friday Evening Lecturer, Marine Biological Laboratory 2000 John Simon …

… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a … impact on the microbial communities within soil. Using metagenomics, scientists can shed light on hidden … the FICUS program to JEM and used resources at the DOE Joint Genome Institute (JGI) and the Environmental Molecular …

… diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s … been co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We … processed 13,700 metabolomics samples With our users, 247 publications were published   …

… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least … (“contigs”) from thousands of ecologically diverse metagenomics samples. The work is supported by NIH Common …

… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …