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… next-generation sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  …

In “autopolyploids”, genome duplication occurs within a single species. By contrast, “allopolyploids” arise when different ancestral … oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is octoploid …

… a  genomic look at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and … decomposers that can break down all of wood’s components — cellulose, hemicellulose, and the toughest molecule, lignin. … countries. Genome and transcriptome sequencing were enabled by the Community Science Program (CSP) at the U.S. …

Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …

… of the National Academy of Sciences bridges this gap, by tracing the evolution of a specific enzyme family called … Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley … FastTree and identified 62 distinct AT groups. However, no single AT group was conserved across all species — a …

… warmer waters, including the tropics, tend to be dominated by prokaryotes (microorganisms without a defined nucleus). … Communications , warmer waters and communities dominated by prokaryotes could replace those of eukaryotes much more … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …

The archaeal genome was detected in samples collected by Stephen Quake’s team at Yellowstone National Park’s … these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these … more with JGI Microbial Program head Tanja Woyke and her Single Cells team member Frederik Schulz to screen the …

… to large ecosystem-level processes for the first time. By collecting data from 27 different poplar ( Populus … to a sustainable bioeconomy. Summary The 27 samples studied by researchers came from two environments: natural forests … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …

… traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to … highlighting the fact that the genetic information in a single reference genome is insufficient. “We really have to … said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author on the …

Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome … in April, which immediately precedes the JGI’s 14th Annual Genomics of Energy & Environment Meeting. Registration for … the genes for both pathways had never been observed in a single microbial population until now. Ca.   M. …

A group led by JGI scientists have made strides in improving and … scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to … as part of the Community Science Program (CSP)  Functional Genomics proposal call. …