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A One-Stop Shop for Analyzing Algal Genomes
… to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … They play key roles in global carbon cycling, are sources of natural products, and have potential as biofuel … analyze gene expression from published experiments; study DNA methylation, which gives clues to how an organism may …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… (MBIB) Division, and Energy Storage & Distributed Resources Division at Berkeley Lab.  Building on the momentum … from UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on … single cell and systems biology, omics, and big data science, machine learning for experimental science, energy …
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Training the Next Generation of Talent
… of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus … a part of the students’ thesis,” she says. “Second, we want our students to gain the opportunity to see what research is … that would allow users to simultaneously run several programs for RNA-Seq assembly to determine which is best for …
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Matt Blow
… provide analysis support and R&D for production and user science. He received his Ph.D. from the Wellcome Trust … Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer Species during Free-Living … Morphology by Distant-Acting In Vivo Enhancers. Science 3426157. Blow et al 2010. ChIP-Seq identification of …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… bioeconomy, including, potentially, methane as an energy source.  Until recently, our understanding of these … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … — so producing methane or consuming methane, those are already diametrically opposite — but also you do not even …
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JGI Announces 2025 New Investigator Portfolio
… Yaqi You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for … The New Investigator call , part of our  Community Science Program , allows us to work and share our tools with … capabilities such as metatranscriptomics and environmental DNA sequencing to explore microbial and plant interactions …
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Tanja Woyke Elected to American Academy of Microbiology
… Genomics and Systems Biology Division of the Lab’s Biosciences Area since 2018. Woyke also holds appointments as … honor,” said Axel Visel , JGI Deputy for Science Programs. “It clearly speaks to the enormous impact her … Woyke’s caliber support the JGI User community in accessing our resources and help them to push the boundaries of energy …
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Massie S. Ballon
… aims to broaden awareness of and access to JGI public resources and the DOE mission, as well as help cultivate the … collaborators.  Ms. Ballon is a molecular biology-trained science communicator with extensive experience shaping … portfolio spans a wide range of topics beyond translating science, including crafting technical reports, developing …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental ch … to provide colleagues at the Salk Institute with genomic DNA samples from Ruminococcus flavefaciens (XPD3002). With …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… omics methods to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are nature's … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Berkeley Lab, screened … Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science …
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Jeremy Schmutz
… Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant … Jeremy Schmutz is the Plant Science Program Head at the JGI. Click to learn more about … North Central College, Naperville, IL BS in Computer Science, North Central College, Naperville, IL …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the energy-producing … standardized structure of the dataset position it as a resource for AI-driven approaches to predicting fungal …
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