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Nikos Kyrpides
… Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at … Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling … AP. et al. (2023) Identification of mobile genetic elements with geNomad. Nat Biotechnol . Epub. Neri U. et al. (2022) …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… York Times 2022 List of Firsts as well as other year-end science discovery lists.  Updates to the Genomic … published in  Nucleic Acids Research .  ID’ing RNA viruses with ease : Searching for RNA sequences within a database can be like combing for the proverbial …
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Crysten Blaby-Haas
… engineering. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics … (2015) where she co-founded and led the Quantitative Plant Science Initiative (2017-2022), a BER Science Focus Area …
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2025 NeLLi Symposium
… tasting, and tours of the Mob Museum and Fremont Street Experience. It will be offered following the NeLLi Symposium … Functional Annotation Lead Steven Ahrendt , Biosystems Data Science …
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An Earth Month Look at Sustainability Efforts at the JGI
… challenges. And many JGIers work to connect those big goals with their everyday activities, striving for sustainability … that works to prepare the IGB to be the first Lab building with laboratories where 90% of landfill waste is diverted to … Garden Club welcomes more members, regardless of gardening experience, Ciobanu said. “If you want to learn both how to …
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Boosting Small Molecule Production in Super “Soup”
… strains. (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to make … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … with  Yasuo Yoshikuni and  Ian Blaby of the  DNA Synthesis Science Program . “This collaboration brings tremendous …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. Sneddon is an accomplished leader in data, … in bacteria. Proceedings of the National Academy of Sciences of the United States of America 109(3), 805–810 …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute … EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, NanoSIMS, … so you’d need at least 2 micrograms in the sample to start with. 2. Q: What would a typical turnaround time be for data …
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Pinning Down a Piece of Photosynthesis
… pin down.  Photosynthesis appears to have a lot in common with a Rube Goldberg machine: surprising dependencies, … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … a project led by Blaby, through what is now the  Community Science Program Functional Genomics proposal call, the JGI …
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Webinar: MycoCosm Tutorial
… on the scientific questions asked and whether they are within DOE mission areas of bioenergy, carbon cycling, and … MycoCosm and Fungal Program pages ( https://jgi.doe.gov/our-science/science-programs/fungal-genomics/ ). You can also contact us … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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A User-Centered Approach to Accessing JGI Data
… Users were previously limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( … are currently limited to: Public data: datasets associated with completed projects that are eligible for public … + annotations) For IMG & Mycocosm: Data that is associated with an ITS project ID (AP or SP) Q: What JGI Data Policy …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa … metric tons . The global chocolate brands couldn’t exist without cocoa.  But today the plant is under threat due to … of the world’s largest buyers of cocoa, is collaborating with others to develop healthier and more productive cacao …
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