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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… 25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … aims to create pipelines, tools and other standardized data resources that the global research community can access and … the basis of their behavior in the environment. Large metagenomic surveys could lead to better predictive models of …
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Genome sequence of Streptomyces sp. DSM 42143
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … and Liability Act (CERCLA) was enacted by Congress in 1980 for Superfund sites which are hazardous waste areas that … Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  …
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A Natural Mechanism Can Turbocharge Viral Evolution
… dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … Berkeley National Laboratory (Berkeley Lab), has looked for DGRs in a broad range of publicly available datasets. … who led the research team and is the head of the Viral Genomics group at the JGI, thinks that if you’re a virus or …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… from this biomanufacturing collaboration is available for licensing. The Science In  Nature Communications , … highlights an  ongoing partnership that combines the JGI’s genomic capabilities with the Foundry’s nanoscale materials … of separating urine from other waste streams and recovering resources that could be used for products such as …
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The Earth BioGenome Project 2020: Starting the clock
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the bioenergy and … hear from researchers who are applying genomic sequence information to BER funded activities of plant systems. We will …
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JGI@25: Strengthening Soybean
… ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and … up with him recently. “So, there’s going to be a need for these biofuels and that’s a good niche market for soybean.”  Upon its initial release in 2009, the soybean …
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Boosting Small Molecule Production in Super “Soup”
… to make products such as proteins, and the mechanisms for maintenance to keep processes running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences … the Energy Sciences Network (ESnet) have been recognized for outstanding achievements in science, technology, and … Science user facilities. The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley …
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Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
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